| Organism |
Reference |
| Actinobacillus
actinomycetemcomitans |
Tiranathanagul
et al, 2004 |
| Alloiococcus otitidis |
Harimaya
et al, 2007 |
| Anaplasma phagocytophilum |
Choi et
al, 2004; Lee
& Goodman, 2006 |
| Angelica gias Nakai |
Kim
et al, 2007 |
| Angiostrongylus cantonensis |
Lan et
al, 2004 |
| Aspergillus fumigatus |
Gao
& Wu, 2006 |
| Atopobium vaginae |
Libby
et al, 2008 |
| Bacteroides fragilis |
Kim
et
al, 2006 |
| Bacteroides forsythus |
Hasebe et
al, 2004 |
| Bartonella henselae |
Kempf et
al, 2005; Dehio
et al, 2005 |
| Bifodobacterium infantis |
O'Hara
et al, 2006 |
| Bordetella pertussis |
Ishibashi & Nishikawa, 2003 |
| Borrelia burgdorferi (Lyme Disease spirochete) |
Ebnet
et al, 1997 |
| Brucella abortus |
Pei
et al, 2008 |
| Campylobacter jejuni |
Hu
& Hickey, 2005; Hu
et al, 2006 |
| Castanopsis cuspidate |
Kang
et al, 2007 |
| Chlamydia pneumoniae |
Gencay et
al, 2003; Opitz
et al, 2005 |
| Citrobacter rodentium |
Khan
et al, 2006 |
| Clostridium difficile |
Kim
et al, 2006 |
| Cryptococcus neoformans |
Pietrella
et al, 2005 |
| Cryptosporidium |
Asaad
& Sadek , 2006 |
| Echinococcus granulosus |
Rigano
et
al, 2006 |
| Edwardsiella tarda |
Okuda
et
al, 2006 |
| Ehrlichia chaffeensis |
Zhang et
al, 2004 |
| Eimeria alabamensis |
Alcala-Canto
& Ibarra-Velarde, 2008 |
| Eimeria bovis |
Alcala-Canto
& Ibarra-Velarde, 2008 |
| EPEC, enterophathogenic E. coli |
Savkovic et
al, 1997 |
| Escherichia coli |
Kim
et
al, 2005 |
| Francisella tularensis |
Katz
et
al, 2006; Butchar
et al, 2007; Cole
et al, 2007 |
| Fusobacterium nucleatum |
Huang et
al, 2004 |
| Ganoderma lucidum |
Lin
et al, 2005, 2006 |
| Gardnerella vaginalis |
Hashemi
et al, 1999 |
| Helicobacter pullorum |
Varon
et
al, 2008 |
| Helicobacter pylori |
Münzenmaier et
al, 1997 |
| Lactobacilli |
Klebanoff et
al, 1999 |
| Lactobacillus salivarius |
O'Hara
et
al, 2006 |
| Lactococcus lactis |
Tohno
et
al, 2007 |
| Legionella pneumophila |
Abu-Zant
et
al, 2006; Schmeck
et al, 2006 |
| Leshmania donovani |
Ghosh
et
al, 2006 |
| Listeria monocytogenes |
Hauf
et al, 1994 |
| Moraxella catarrhalis |
Slevogt
et
al, 2006; N'guessan
et al, 2007 |
| Mycobacterium bovis bacillus |
Mendez-Samperio
et
al, 2007 |
| Mycoplasma fermentans |
Marie et
al, 1999 |
| Mycoplasma genitalium |
Qiu
et
al, 2007; You
et al, 2008 |
| Mycoplasma hyorhinis |
Kagemann
et
al, 2005 |
| Mycoplasma pneumoniae |
Shimizu
et
al, 2005 |
| Mycobacteria tuberculosis |
Zhang et
al, 1994 |
| Neisseria gonorrhoeae |
Naumann et
al, 1997 |
| Neisseria meningiditis |
Constantin et
al, 2004 |
| Pneumocystis murina |
Zhang
et
al, 2006 |
| Porphyromonas gingivalis |
Kobayashi-Sakamoto et
al, 2004;
Walter et
al, 2004 |
| Prevotella intermedia |
Kim et
al, 2004 |
| Pseudomonas aerugenosa |
Cannon et
al, 2003 |
| Rhodobacter sphaeroides |
Lohmann
et
al, 2007 |
| Rhodococcus equi |
Darrah et
al, 2004 |
| Rickettsia rickettsii |
Sporn et
al, 1997 |
| Salicornia herbacea |
Lee
et
al, 2005 |
| Salmonella dublin |
Eaves-Pyles et
al, 1999 |
| Salmonella enterica |
Savannovong
et
al, 2007 |
| Salmonella typhimurium |
Hobbie et
al, 1997 |
| Serratia marcescens |
Kida
et
al, 2006 |
| Shigella dysenteriae type I |
Biswas
et al, 2006 |
| Shigella flexneri |
Dyer
et al, 1993 |
| Spirulina |
Balachandran
et al, 2006 |
| Staphyllococcus aureus |
Busam et
al, 1992 |
| Streptococci (group A) |
Medina
et al, 2002 |
| Streptococcus (group B) |
Glibetic et
al, 2001 |
| Streptomyces californicus (fungus) |
Huttunen et
al, 2004 |
| Taenia solium |
Uddin
et
al, 2006 |
| Treponema denticola |
Tanabe
et
al, 2008 |
| Trichomonas vaginalis |
Chang et
al, 2004 |
| Ureaplasma parvum |
Shimizu
et
al, 2008 |
| Ureaplasma urealyticum |
Li et
al, 2000 |
| Vibrio vulnificus |
Lee
et
al, 2006 |
| Yersinia enterocolitica |
Elewaut et
al, 1999 |
| Molecule |
Reference |
| Angelan (Angelica gigas Nakai) |
Kim
et
al, 2007 |
| Antigen B (Echinococcus granulosus) |
Rigano
et
al, 2006 |
| Apicidin (HDAC inhibitor) |
Kim
et
al, 2006 |
| Apicularen A |
Hong et
al, 2004 |
| Bacterial extract OM-85-BV |
Huber
et
al, 2005 |
| CagA (Heliobacter pylori) |
Brandt
et al, 2005 |
| CpG |
Krieg, 2000 |
| Cytolysin (Vibrio vulnificus) |
Kang et
al, 2002 |
| Deoxynivalenol (Mycoplasma) |
Van
De Walle et
al, 2008 |
| Diphosphoryl lipid A (Rhodobacter sphaeroides) |
Lawrence et
al, 1995 |
| Enterotoxin (Bateroides fragilis) |
Wu et
al, 2004 |
| Exotoxin B |
Busam et
al, 1992 |
| Fimbria protein ATTLE (P gingivalis) |
Ogawa et
al, 2002 |
| Flagellin (E coli Nissle 1917) |
Schlee
et
al, 2007 |
| Flagellin (Pseudomonas aerugenosa) |
Tseng
et
al, 2005 |
| Flagellin FlaB (Vibrio vulnificus) |
Lee
et
al, 2006 |
| Flagellins FliC, FljB (Salmonella) |
Simon
& Samuel, 2007 |
| Fumonisin B1 (Fusarium verticillioides) |
Gopee & Sharma, 2004 |
| G(Anh) M Tetra (E coli) |
Dokter et
al, 1994 |
| Glycosylphosphatidylinositols (Plasmodium falciparum) |
Zhu
et al, 2004 |
| Hemagluttin B (Porphyromonas gingivalis) |
Zhang
et al, 2005 |
| JHP940 (Heliobacter phylori) |
Rizwan
et al, 2007 |
| Lipoprotein LpK (Mycobacterioum leprae) |
Yamashita et
al, 2004 |
| Lipoteichoic acid (Listeria) |
Hauf et
al, 1997; Kao
et al, 2005 |
| Lipopeptides (Mycoplasmia pneumoniae) |
Shimizu
et al, 2007 |
| Lipoproteins (Ureaplasma parvum) |
Shimizu
et al, 2008 |
| Lipopolysaccharide (LPS) |
Sen & Baltimore, 1986 |
| Membrane lipoproteins (Mycoplasma fermentans) |
Garcia et
al, 1998;
Rawadi et
al, 1999 |
| Membrane lipoproteins (Mycoplasma penetrans) |
Zeng et
al, 2004 |
| Membrane lipoproteins (Mycoplasma genitalium) |
Qiu
et
al, 2007 |
| Dipalmitoylated lipoproteins (Mycoplasma pneumoniae) |
Shimizu
et
al, 2005 |
| Mannoproteins (Cryptococcus neoformans) |
Pietrella
et al, 2005 |
| Muramyl Peptides |
Schreck et
al, 1992 |
| Mycobacterium lipoarabinomannan |
Tapping & Tobias, 2003 |
| Oligodeoxynucleotide (Mycobacterium bovis) |
Lee
et
al, 2006 |
| Oligodeoxynucleotide (Escherichia coli) |
Choi
et
al, 2006 |
| Peptidoglycan (Lactobacillus) |
Sun
et
al, 2005 |
| PlcA (Phospholipase) (Listeria) |
Hauf et
al, 1997 |
| PlcB (Phospholipase) (Listeria) |
Hauf
et al, 1997 |
| Polysaccharides (Salicornia herbacea) |
Lee
et
al, 2005 |
| Polysaccharides (Ganoderma lucidum) |
Lin
et
al, 2006 |
| Polysaccharides (Spirulina) |
Balachandran
et
al, 2006 |
| Polysaccharides (Lactococcus lactis) |
Tohno
et
al, 2007 |
| Porin (Shigella dysenteriae) |
Biswas
et
al, 2006 |
| Porins (Gram negative bacteria) |
Perfetto et
al, 2003 |
| PS-G (Ganoderma lucidum) |
Lin
et
al, 2005 |
| Porin 1B (Gonoccocus) |
Binnicker et
al, 2004 |
| Serralysin (Serratia marcescens) |
Kida
et
al, 2006 |
| Staphylococcus enterotoxin A and B (super antigen) |
Trede et
al, 1993;
Busam et
al, 1992 |
| Tip-alpha (Heliobacter pylori) |
Suganuma
et
al, 2006; Kuzuhara
et al, 2007 |
| Toxic Shock Syndrome Toxin 1 |
Trede et
al, 1993 |
| Toxin A (Clostridium difficile) |
Kim
et
al, 2006 |
| Triacylated lipoproteins (Mycoplasma pneumoniae;
M. genitalium) |
Shimizu
et
al, 2007; 2008 |
| Type IVB Pili (Salmonella typhi) |
Wang
et
al, 2005 |
| Urease B (Heliobacter pylori) |
Beswick
et
al, 2006 |
| UspA1 (Moraxella catarrhalis) |
N'guessan
et
al, 2007 |
| Wogonin (Scutellaria baicalensis) |
Chiu et
al, 2002 |
| Virus |
Reference |
| Adenovirus |
Shurman et
al, 1989 |
| Avian influenza virus (H5NI, HIN1) |
Lee
et
al, 2005 |
| Cytomegalovirus |
Sambucetti et
al, 1989 |
| Ebola |
Martinez
et al, 2007 |
| Epstein-Barr Virus (EBV) |
Hammarskjöld & Simurda, 1992 |
| Encephalomyocarditis virus |
Moran
et al, 2005 |
| Flavavirus (Japanese Encephalitis virus; Dengue
Virus serotype 2) |
Chang
et al, 2005: Medin
et al, 2005 |
| Hepatitis B Virus |
Siddiqui
et al, 1989 |
| Herpes Virus Saimiri |
Yao et
al, 1995; Cho
et al, 2006 |
| Human Herpesvirus 6 |
Ensoli et
al, 1989 |
| HIV-1 |
Bachelerie et
al, 1991 |
| Herpex Simplex Virus -1 |
Gimble et
al, 1988 |
| Herpex Simplex Virus -2 |
Yedowitz
& Blaho, 2005 |
| Human metapneumovirus |
Bao
et al, 2007 |
| Human Papillomavirus-like particles |
Yan
et al, 2005 |
| Human Papillomavirus type 16 |
James
et al, 2006 |
| HTLV-I |
Leung & Nabel, 1988;
Ballard et
al, 1988 |
| Influenza Virus |
Ronni et
al, 1997; Sun
et al, 2005 |
| Kilham rat virus |
Zipris
et al, 2007 |
| Measles Virus |
Harcourt et
al, 1999 |
| Molony Murine Leukemia Virus |
Pak & Faller, 1996 |
| mRNA (in vitro transcribed) |
Kariko et
al, 2004 |
| Newcastle disease virus |
Ten et
al, 1993 |
| Porcine arterivirus |
Lee
& Kleiboeker, 2005 |
| Rabies virus |
Nakamichi
et al, 2005 |
| Respiratory Syncytial Virus |
Mastronarde et
al, 1996;
Garofalo et
al, 1996; Ennanciri
et al, 2006 |
| Rhinovirus |
Zhu et
al, 1996 |
| SARS coronavirus |
Cinatl
et al, 2005; Liu
et al, 2007 |
| Sendai paramyxovirus |
Hiscott et
al, 1989 |
| Shope Fibroma Virus |
Dorfleutner
et
al, 2007 |
| Sindbis Virus |
Lin et
al, 1995 |
| Vaccinia Virus Akara |
Guerra et
al, 2004 |
| Veesicular stomatitis virus |
Georgel
et
al, 2007 |
| West Nile Flavavirus |
Kesson
& King, 2001 |
| Product |
Reference |
| Adenovirus 5: E1A |
Shurman
et al, 1989 |
| Adenovirus: E3/19K |
Pahl et
al, 1996 |
| Adenovirus type 5: fiber |
Tamanini
et
al, 2006 |
| African Swine Fever Virus: IAP |
Rodriguez et
al, 2002 |
| Antibody to Dengue Virus nonstructural protein 1 |
Lin et
al,
2005 |
| CMV: ie1 |
Sambucetti et
al, 1989 |
| Double-stranded RNA |
Visvanathan & Goodbourn, 1989 |
| Ebola: viral matrix & glycoprotein |
Martinez
et al, 2007 |
| EBV: EBER small RNAs |
Scala et
al, 1993 |
| EBV: EBNA-2 |
Samanta
et
al, 2006 |
| EBV: LMP1 |
Hammarskjöld & Simurda, 1992 |
| HBV: e antigen |
Yang
et
al, 2006 |
| HBV: HBx |
Twu et
al, 1989 |
| HBV: LHBs |
Hildt et
al, 1996 |
| HBV: MHBst |
Meyer et
al, 1992 |
| HCV: Core protein |
You et
al, 1999 |
| HCV: NS3 |
Hassan
et
al, 2006 |
| Herpes Saimiri: HVS13 |
Yao et
al, 1995 |
| Herpes Saimiri: STP-A11 |
Cho
et al, 2006; Jeong
et al, 2007 |
| Herpes Saimiri:StpC |
Sorokina
et al, 2004; Chung
et al, 2007 |
| HIV-1: gp160 |
Chirmule et
al, 1994 |
| HIV-1: gp120 |
Alvarez
et
al, 2005 |
| HIV-1: Nef |
Messmer et
al, 2002;
Varin et
al, 2003 |
| HIV-1: p9 (9 aa peptide) |
De Lucca et
al, 2002 |
| HIV-1: Tat |
Westendorp et
al, 1994;
Lee et al, 2005; Song
et al, 2007 |
| HIV-1: Vpr |
Varin
et
al, 2005 |
| HPV-16: E6 |
James
et
al, 2006 |
| Herpes simplex-I: ICP27 |
Hargett
et
al, 2006 |
| HTLV-I: Tax |
Ballard et
al, 1988; Leung & Nabel, 1988 |
| HTLV-II: Tax |
Tanaka et
al, 1996 |
| Influenza Virus: Hemagglutinin |
Pahl & Baeuerle, 1995 |
| KSHV: K1 |
Prakash
et al, 2005 |
| Parvovirus B19: NSI |
Moffatt et
al, 1996 |
| Respiratory Syncytial Virus: M2-1 |
Reimers et
al, 2005 |
| SARS: nuclcocapsid |
Liao
et
al, 2005 |
| SARS: non-structural protein-1 |
Law
et
al, 2006 |
| SARS: Spike protein |
Liu
et
al, 2007 |
| Shope Fibroma virus: vPOP |
Dorfleutner
et
al, 2007 |
| SV40: small T-antigen |
Johannessen et
al, 2003 |
| VSV: glycoprotein G |
Georgel
et
al, 2007 |
| Condition |
Reference |
| Acidic pH |
Bischoff
et
al, 2008 |
| Acute lung injury/respiratory distress
syndrome |
Manning et
al, 1995 |
| Adhesion |
Lin et
al, 1995 |
| Angina pectoris |
Valen et
al, 2001 |
| Antiphospholipid antibodies |
Espinola et
al, 2003; Lopez-Pedrera
et al, 2005 |
| Appendicitis |
Pennington et
al, 2000 |
| Low arginine |
Kagemann
et
al, 2007 |
| Asthma |
Hart et
al, 1998 |
| Biotin deficiency |
Griffin
& Zempleni, 2005 |
| Butter and Walnut diet |
Bellido et
al, 2004 |
| Cecal ligatin and puncture (mouse) |
Williams et
al, 1999 |
| Crohn's disease/ulcerative colitis |
Rogler et
al, 1998 |
| Corneal epidemic keratoconjunctivitis |
Kase et
al, 2004 |
| Coronary artery by-pass |
Meldrum et
al, 2003 |
| Depolarization |
Kaltschmidt et
al, 1995; Valdes
et al, 2006 |
| Pulsed electromagnetic fields |
Natarajan
et
al, 2006 |
| Static electromagnetic field |
Sakurai
et
al, 2007 |
| Hemorrhage |
Shenkar et
al, 1996;
Shenkar & Abraham, 1997 |
| Hypercholesterolemia |
Wilson et
al, 2000 |
| High-protein/high carbohydrate diet |
van
Erk et
al, 2006 |
| Hyperglycemia |
Pipeir & Riaz-ul-Haq, 1997;
Yerneni et
al, 1999; Dickinson
et al, 2008 |
| Hyperhomocysteinemia (homocysteine) |
Zhang et
al, 2004; Zeng
et al, 2005; Zhang
et al, 2006; Carluccio
et al, 2007 |
| Hyperosmotic Shock |
Courtois
et al, 1997 |
| Hyperoxia |
Shea et
al, 1996; Dieperink
et al, 2006 |
| Hypothermia |
Fairchild
et
al, 2005 |
| Hypoxia (chronic intermittent) |
Greenberg
et
al, 2006 |
| Ischemia (transient, focal) |
Gabriel et
al, 1999;
Li et
al, 1999 |
| Ischemic preconditioning |
Zhang et
al, 2003 |
| Liver Regeneration |
Tewari et
al, 1992;
Cressman et
al, 1994 |
| Human labor (childbirth) |
Allport et
al, 2001 |
| Mechanical Ventilation (in vitro) |
Pugin et
al, 1998 |
| Memory retrieval |
Merlo
et al, 2005 |
| Middle cerebral artery occlusion |
Zhang
et al, 2005 |
| Muscle disuse |
Hunter et
al, 2002 |
| Muscular Dystrophy (type 2A) |
Baghdiguian et
al, 2001 |
| Neuronal firing |
Lerner-Natoli et
al, 2000 |
| Overventilation (perfused lungs) |
Uhlig et
al,
2002 |
| Pancreatitis |
Gukovsky
et al, 1998 |
| Proteinuria |
Praga & Morales, 2002;
Abbate et al, 2006; Takase
et al, 2008 |
| Reoxygenation |
Rupec & Baeuerle, 1995 |
| Rheumatoid arthritis |
Miyazawa et
al, 1998 |
| Senescence (keratinocytes) |
Bernard et
al, 2004 |
| Shear stress |
Lan et
al, 1994 |
| Obstructive sleep apnea |
Htoo
et
al, 2006; Yamauchi
et al, 2006 |
| Neuoronal trimethyltin injury |
Kassed et
al, 2004 |
| Uni-axial cyclic cell stretching |
Inoh et
al, 2002 |
| T-cell selection |
Moore et
al, 1995 |
| Tert-butyl hydroperoxide |
Lee
et
al, 2005 |
| Condition |
Reference |
| Acoustic overstimulation |
Nagashima
et al, 2007 |
| Bile duct ligation |
Zhong et
al, 2002; Samuel
et al, 2006 |
| Cyclic mechanical muscle strain |
Kumar et
al, 2004; Liang
et al, 2006 |
| Double-strand DNA breaks |
Habraken
& Piette, 2006 |
| Exercise |
Hollander et
al, 2001; Toldy
et al, 2005; Garcia-Lopez
et al, 2007 |
| Gamma Radiation |
Brach et
al, 1991 |
| Heavy ion irradiation |
Mitra et
al, 2004 |
| High fat diet |
Zhang
et al, 2004 |
| Laminar shear stress |
Chen et
al, 2003 |
| Dietary lipid hydroperoxide |
Tsujinaka
et al, 2005 |
| PPME Photosensitization |
Legrand-Poels et
al, 1995 |
| Ultraviolet irradiation (UV-A, B, C) |
Stein
et al, 1989 |
| Mechanical lung ventilation |
Uhlig
et al, 2002 |
| Mesangial cell stretching |
Gruden
et al, 2005 |
| Obesity |
Ghanim et
al, 2004 |
| Photocynamic therapy |
Stott
& Korbelik, 2006 |
| Shock waves |
Sonden
et al, 2006 |
| Simulated microgravity environment |
Wise
et
al, 2005; Sharma
et al, 2008 |
| Sleep deprivation |
Brandt et
al, 2004; Irwin
et al, 2008 |
| Split dose radiation |
Liu
et
al, 2006 |
| Traumatic brain injury |
Hang
et al, 2005 |
| Vein graft handling |
Hinokiyama
et al, 2006 |
| Vitamin E deficiency |
Morante
et al, 2005 |
| Water-solube hat-stacked carbon nanofibers |
Sato
et al, 2005 |
| Wounding combined with HeNe irradiation |
Haas et
al, 1998 |
| Wounding combined with thermal irradiation |
Nomoto et
al, 2001 |
| Condition |
Reference |
| Ambient air particles |
Sama
et
al, 2007 |
| Aroclor 1254 (PCB mixture) |
Basha
et
al, 2005 |
| Arsenic |
Huang et
al, 2001, Ouyang
et al, 2005; Fry
et al, 2007; Klei
& Barchowsky, 2008 |
| 3,3',4,4'-tetrachlorobiphenyl (PCB77) |
Hennig et
al, 1999; Bezdecny
et al, 2007 |
| Benzo[a]pyrene diol epoxide |
Weng et
al, 2004; Ouyang
et al, 2006; Bolotina
et al, 2007; Ding
et al, 2007 |
| Areca nut extract (betel) |
Lin
et al, 2005; Lu
et al, 2006; Tseng
et al, 2008 |
| Carbon nanotubes |
Manna
et
al, 2005 |
| Chromium |
Ye et
al, 1995 |
| Cigarette smoke |
Nishikawa et
al, 1999; Zhang
et al, 2007; Preciado
et al, 2007 |
| Cigarette smoke condensate |
Anto et
al, 2002 |
| Cobalt |
Goebeler et
al, 1995; Kalpana
et al, 2008 |
| Cooking oil fumes |
Hung
et
al, 2005 |
| Copper |
Persichini
et
al, 2006 |
| Crocidolite asbestos fibers |
Janssen et
al, 1995 |
| Dibutyl phthalate |
Tharappel
et
al, 2001 |
| Dicamba (herbicide, peroxisome proliferator) |
|